Gene ontology dendrograms

Three example dendrograms (for three namespaces) based on ontological similarities of GO terms (clustering based on occurrence data, using REBUS 2.0).

Only “is_a” information used. Every GO term “is_a” itself. Transitive “is_a” connections were added.

1) Biological process

The ontological relations of the b.p. GO terms each of which “is_a” at least 60 GO terms (including itself).

ea_gonames_biological_process_chosen_60-inf

2) Cellular component

The ontological relations of the c.c. GO terms each of which “is_a” at least 17 GO terms (including itself).

ea_gonames_cellular_component_chosen_17-inf

3) Molecular function

The ontological relations of the m.f. GO terms each of which “is_a” at least 25 GO terms (including itself).

ea_gonames_molecular_function_chosen_25-inf

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